recipe shapemapper

ShapeMapper converts raw sequencing files into mutational profiles, creates SHAPE reactivity plots, and provides extensive diagnostic information useful for experiment analysis and troubleshooting.






package shapemapper

(downloads) docker_shapemapper



depends bowtie2:

depends httplib2:

depends libgcc-ng:


depends matplotlib:

depends python:


depends rnastructure:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install shapemapper

and update with::

   mamba update shapemapper

To create a new environment, run:

mamba create --name myenvname shapemapper

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `shapemapper/tags`_ for valid values for ``<tag>``)

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