recipe shapemapper

ShapeMapper converts raw sequencing files into mutational profiles, creates SHAPE reactivity plots, and provides extensive diagnostic information useful for experiment analysis and troubleshooting.

Homepage

http://www.chem.unc.edu/rna/software.html

License

GPL

Recipe

/shapemapper/meta.yaml

package shapemapper

(downloads) docker_shapemapper

Versions

1.2-1, 1.2-0

Depends bowtie2

Depends httplib2

Depends libgcc-ng

>=4.9

Depends matplotlib

Depends python

>=2.7,<2.8.0a0

Depends rnastructure

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install shapemapper

and update with:

conda update shapemapper

or use the docker container:

docker pull quay.io/biocontainers/shapemapper:<tag>

(see shapemapper/tags for valid values for <tag>)