recipe sherpas

Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences.

Homepage:

https://github.com/phylo42/sherpas

License:

MIT / MIT

Recipe:

/sherpas/meta.yaml

Links:

doi: 10.1101/2020.06.22.161422

A new, alignment-free genome recombination detection tool exploiting the idea of phylo-kmers (Linard et al. 2019) to accelerate the process by several orders of magnitude while keeping comparable accuracy.

package sherpas

(downloads) docker_sherpas

versions:

1.0.2-6,  1.0.2-5,  1.0.2-4,  1.0.2-3,  1.0.2-2,  1.0.2-1,  1.0.2-0,  1.0.0-0

depends boost-cpp:

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sherpas

and update with::

   mamba update sherpas

To create a new environment, run:

mamba create --name myenvname sherpas

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sherpas:<tag>

(see `sherpas/tags`_ for valid values for ``<tag>``)

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