Package Recipe 'shigatyper'

recipe shigatyper

Typing tool for Shigella spp. from WGS Illumina sequencing

Homepage:: https://github.com/CFSAN-Biostatistics/shigatyper
License:: Public Domain / Public Domain
Recipe:: /shigatyper/meta.yaml

package shigatyper¶

Versions:

2.0.4-0, 2.0.3-0, 2.0.2-0, 2.0.1-1, 2.0.1-0, 1.0.7-0, 1.0.6-0, 1.0.5-3

Depends:

bcftools >=1.9
minimap2 >=2.16
pandas >=0.24.2
python >=3.7
samtools >=1.9

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install shigatyper

and update with:

conda update shigatyper

or use the docker container:

docker pull quay.io/biocontainers/shigatyper:<tag>

(see shigatyper/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/shigatyper/README.html)