recipe shiver

SHIVER - Sequences from HIV Easily Reconstructed

Homepage

https://github.com/ChrisHIV/shiver

License

GPL / GPL-3.0

Recipe

/shiver/meta.yaml

package shiver

(downloads) docker_shiver

Versions

1.3.5-0, 1.2.1-0, 1.1.0-4, 1.1.0-1, 1.1.0-0, 1.0.0-0

Depends biopython

Depends blast

>=2.2.28

Depends mafft

Depends picard

Depends python

2.7*

Depends samtools

Depends smalt

Depends trimmomatic

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install shiver

and update with:

conda update shiver

or use the docker container:

docker pull quay.io/biocontainers/shiver:<tag>

(see shiver/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/shiver/README.html)