recipe shmlast

conditional reciprocal best hits with LAST

Homepage:

https://github.com/camillescott/shmlast

License:

BSD-3-Clause

Recipe:

/shmlast/meta.yaml

package shmlast

versions:

1.6-0,  1.4-2,  1.4-1,  1.4-0,  1.3-0,  1.2.1-1,  1.2.1-0

depends doit:

>=0.29.0

depends ficus:

>=0.5

depends filelock:

>=2.0.6

depends last:

<=874

depends matplotlib-base:

>=3

depends numexpr:

>=2.3.1

depends numpy:

>=1.9.0

depends ope:

>=0.6

depends pandas:

>=0.17.0

depends parallel:

depends python:

>=3

depends scipy:

>=0.16.0

depends screed:

>=0.9

depends seaborn:

>=0.6.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install shmlast

and update with::

   mamba update shmlast

To create a new environment, run:

mamba create --name myenvname shmlast

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/shmlast:<tag>

(see `shmlast/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/shmlast/README.html)