recipe shorttracks

ShortTracks : Useful length- and strand-based coverage files (bigwig) from small RNA-seq alignments (BAM)

Homepage:

https://github.com/MikeAxtell/ShortTracks

License:

MIT / MIT

Recipe:

/shorttracks/meta.yaml

package shorttracks

Versions:

0.1-0

Depends:

• python >=3.10

• samtools >=1.10

• ucsc-wigtobigwig

Required By:

• shortstack

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install shorttracks

and update with:

conda update shorttracks

or use the docker container:

docker pull quay.io/biocontainers/shorttracks:<tag>

(see shorttracks/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/shorttracks/README.html)