-
recipe
shovill¶ Microbial assembly pipeline for Illumina paired-end reads
- Homepage
- License
GPL2
- Recipe
-
package
shovill¶ 
- Versions
1.0.4-0, 1.0.1-0, 1.0.0-0, 0.9.0-1, 0.9.0-0, 0.8.0-0, 0.7.1-2, 0.7.1-1, 0.7.1-0
- Depends bwa
>=0.7.17
- Depends flash
>=1.2
- Depends lighter
>=1.1
- Depends mash
>=2.1
- Depends megahit
>=1.1
- Depends perl
- Depends perl-file-spec
- Depends perl-findbin
- Depends pigz
- Depends pilon
>=1.22
- Depends samclip
>=0.2
- Depends samtools
>=1.8
- Depends seqtk
>=1.3
- Depends skesa
>=2.2
- Depends spades
>=3.6
- Depends trimmomatic
>=0.36
- Depends velvet
>=1.2.10
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install shovill
and update with:
conda update shovill
or use the docker container:
docker pull quay.io/biocontainers/shovill:<tag>
(see shovill/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/shovill/README.html)