recipe sibeliaz

A fast whole-genome aligner based on de Bruijn graphs.

Homepage:

https://github.com/medvedevgroup/SibeliaZ

License:

Custom OSS

Recipe:

/sibeliaz/meta.yaml

package sibeliaz

versions:

1.2.5-3,  1.2.5-2,  1.2.5-1,  1.2.5-0,  1.2.4-2,  1.2.4-1,  1.2.4-0,  1.2.3-0,  1.2.2-1, 

1.2.5-3,  1.2.5-2,  1.2.5-1,  1.2.5-0,  1.2.4-2,  1.2.4-1,  1.2.4-0,  1.2.3-0,  1.2.2-1,  1.2.2-0

depends _openmp_mutex:

>=4.5

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends maf2synteny:

depends spoa:

4.0.3-0.*

depends tbb:

>=2021.9.0

depends twopaco:

>0.9.2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sibeliaz

and update with::

   mamba update sibeliaz

To create a new environment, run:

mamba create --name myenvname sibeliaz

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sibeliaz:<tag>

(see `sibeliaz/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

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