recipe sicer

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

Homepage:

http://home.gwu.edu/~wpeng/Software.htm

License:

MIT / MIT

Recipe:

/sicer/meta.yaml

Links:

usegalaxy-eu: peakcalling_sicer

package sicer

(downloads) docker_sicer

versions:

1.1-5,  1.1-4,  1.1-3,  1.1-2,  1.1-1,  1.1-0

depends numpy:

depends python:

<3

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sicer

and update with::

   mamba update sicer

To create a new environment, run:

mamba create --name myenvname sicer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sicer:<tag>

(see `sicer/tags`_ for valid values for ``<tag>``)

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