recipe sigmut

Wrapper of SigProfiler (Copyright(c) 2019, Erik Bergstrom [Alexandrov Lab])

Homepage:

https://github.com/artbio/sigmut

License:

BSD / BSD 2-Clause

Recipe:

/sigmut/meta.yaml

package sigmut

versions:

1.0-2,  1.0-1,  1.0-0

depends matplotlib-base:

depends numpy:

>=1.17.5

depends pandas:

depends python:

>=3.7

depends scipy:

depends statsmodels:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sigmut

and update with::

   mamba update sigmut

To create a new environment, run:

mamba create --name myenvname sigmut

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sigmut:<tag>

(see `sigmut/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sigmut/README.html)