recipe sim4db

Sim4db and leaff: Utilities for fast batch spliced alignment and sequence indexing

Homepage:

http://kmer.sourceforge.net/wiki/index.php/Getting_Started_with_Sim4db

License:

GPL

Recipe:

/sim4db/meta.yaml

package sim4db

(downloads) docker_sim4db

versions:

2008-0

depends libgcc:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sim4db

and update with::

   mamba update sim4db

To create a new environment, run:

mamba create --name myenvname sim4db

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sim4db:<tag>

(see `sim4db/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sim4db/README.html)