recipe simlord

SimLoRD is a read simulator for long reads from third generation sequencing. Currently, it supports the Pacific Biosciences SMRT error model.

Homepage:

https://bitbucket.org/genomeinformatics/simlord/

License:

MIT License

Recipe:

/simlord/meta.yaml

package simlord

versions:

1.0.4-3,  1.0.4-2,  1.0.4-1,  1.0.4-0,  1.0.3-3,  1.0.3-2,  1.0.2-2,  1.0.2-0,  1.0.1-0, 

1.0.4-3,  1.0.4-2,  1.0.4-1,  1.0.4-0,  1.0.3-3,  1.0.3-2,  1.0.2-2,  1.0.2-0,  1.0.1-0,  0.7.3-0

depends dinopy:

depends libgcc-ng:

>=12

depends numpy:

depends pysam:

>=0.8.4

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install simlord

and update with::

   mamba update simlord

To create a new environment, run:

mamba create --name myenvname simlord

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/simlord:<tag>

(see `simlord/tags`_ for valid values for ``<tag>``)

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