recipe singlecell-barcodes

whitelisted singlecell barcodes and information regarding where molecular/sample/cellular barcodes are in each read, for various singlecell protocols

Homepage:

https://github.com/roryk/singlecell-barcodes

License:

MIT

Recipe:

/singlecell-barcodes/meta.yaml

package singlecell-barcodes

(downloads) docker_singlecell-barcodes

versions:

0.2-3,  0.2-2,  0.2-1,  0.2-0,  0.1-1

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install singlecell-barcodes

and update with::

   mamba update singlecell-barcodes

To create a new environment, run:

mamba create --name myenvname singlecell-barcodes

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/singlecell-barcodes:<tag>

(see `singlecell-barcodes/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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