recipe sipros

Tools for stable isotopic mass spectrometry-based metaproteomics

Homepage:

https://github.com/thepanlab/Sipros4

License:

MIT

Recipe:

/sipros/meta.yaml

Links:

biotools: sipros, doi: 10.1186/s40168-024-01866-1

"Tools for stable isotopic mass spectrometry-based metaproteomics research developed by Sipros team. These include Raxport, SiprosV4, SiprosEnsemble and some python / R scripts."

package sipros

versions:

4.01-0

depends bioconductor-biostrings:

depends mono:

depends numpy:

1.16.*

depends python:

2.7.*

depends r-base:

depends r-stringr:

depends r-tidyr:

depends scikit-learn:

0.20.3.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sipros

and update with::

   mamba update sipros

To create a new environment, run:

mamba create --name myenvname sipros

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sipros:<tag>

(see `sipros/tags`_ for valid values for ``<tag>``)

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