recipe sketchy

Real-time lineage hashing and genotyping of bacterial pathogens

Homepage:

https://github.com/esteinig/sketchy

License:

MIT

Recipe:

/sketchy/meta.yaml

package sketchy

Versions:

0.4.5-2,  0.4.5-1,  0.4.5-0,  0.4.4-1,  0.4.4-0,  0.4.3.1-0,  0.4.3-0

Depends:

• braceexpand

• click

• colorama

• dendropy

• deprecation

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• mash 2.2

• matplotlib-base

• networkx

• nextflow

• numpy

• pandas

• psutil

• pyfastx

• pysam

• pytest

• python >=3.7,<3.8.0a0

• python-dateutil

• python_abi 3.7.* *_cp37m

• scipy

• seaborn

• tqdm

• watchdog

• wget

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install sketchy

and update with:

conda update sketchy

or use the docker container:

docker pull quay.io/biocontainers/sketchy:<tag>

(see sketchy/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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