recipe sketchy

Real-time lineage hashing and genotyping of bacterial pathogens

Homepage

https://github.com/esteinig/sketchy

License

MIT

Recipe

/sketchy/meta.yaml

package sketchy

Versions

0.4.5-0,  0.4.4-1,  0.4.4-0,  0.4.3.1-0,  0.4.3-0

Depends

• braceexpand

• click

• colorama

• dendropy

• deprecation

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• mash 2.2

• matplotlib-base

• networkx

• nextflow

• numpy

• pandas

• psutil

• pyfastx

• pysam

• pytest

• python >=3.7,<3.8.0a0

• python-dateutil

• python_abi 3.7.* *_cp37m

• scipy

• seaborn

• tqdm

• watchdog

• wget

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sketchy

and update with:

conda update sketchy

or use the docker container:

docker pull quay.io/biocontainers/sketchy:<tag>

(see sketchy/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sketchy/README.html)