recipe slamdunk

SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducible SLAMseq data analysis.

Homepage

http://t-neumann.github.io/slamdunk

License

GNU Affero General Public License v3 (AGPLv3)

Recipe

/slamdunk/meta.yaml

package slamdunk

(downloads) docker_slamdunk

Versions

0.3.4-1, 0.3.4-0, 0.3.3-0, 0.3.2-1, 0.3.2-0

Depends biopython

>=1.63

Depends bzip2

>=1.0.6,<2.0a0

Depends curl

>=7.64.1,<8.0a0

Depends cython

>=0.20.1

Depends intervaltree

>=2.1.0

Depends joblib

>=0.9.4

Depends libdeflate

>=1.0,<1.1.0a0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends ncurses

>=6.1,<6.2.0a0

Depends openjdk

Depends openssl

>=1.1.1a,<1.1.2a

Depends pandas

>=0.13.1

Depends pybedtools

>=0.6.4

Depends pysam

>=0.8.3

Depends python

>=2.7,<2.8.0a0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-tidyverse

Depends xz

>=5.2.4,<5.3.0a0

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install slamdunk

and update with:

conda update slamdunk

or use the docker container:

docker pull quay.io/biocontainers/slamdunk:<tag>

(see slamdunk/tags for valid values for <tag>)