-
recipe
slamdunk¶ SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducible SLAMseq data analysis.
- Homepage
- License
GNU Affero General Public License v3 (AGPLv3)
- Recipe
-
package
slamdunk¶ 
- Versions
0.3.4-1, 0.3.4-0, 0.3.3-0, 0.3.2-1, 0.3.2-0
- Depends biopython
>=1.63
- Depends bzip2
>=1.0.6,<2.0a0
- Depends curl
>=7.64.1,<8.0a0
- Depends cython
>=0.20.1
- Depends intervaltree
>=2.1.0
- Depends joblib
>=0.9.4
- Depends libdeflate
>=1.0,<1.1.0a0
- Depends libgcc-ng
>=7.3.0
- Depends libstdcxx-ng
>=7.3.0
- Depends ncurses
>=6.1,<6.2.0a0
- Depends openjdk
- Depends openssl
>=1.1.1a,<1.1.2a
- Depends pandas
>=0.13.1
- Depends pybedtools
>=0.6.4
- Depends pysam
>=0.8.3
- Depends python
>=2.7,<2.8.0a0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-tidyverse
- Depends xz
>=5.2.4,<5.3.0a0
- Depends zlib
>=1.2.11,<1.3.0a0
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install slamdunk
and update with:
conda update slamdunk
or use the docker container:
docker pull quay.io/biocontainers/slamdunk:<tag>
(see slamdunk/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/slamdunk/README.html)