recipe slamdunk

Slamdunk is a software tool for SLAMseq data analysis.

Homepage

http://t-neumann.github.io/slamdunk

Documentation

http://t-neumann.github.io/slamdunk/docs.html

Developer docs

https://github.com/t-neumann/slamdunk

License

AGPL / GNU Affero General Public License v3 (AGPLv3)

Recipe

/slamdunk/meta.yaml

Links

doi: 10.1186/s12859-019-2849-7

<img src="http://t-neumann.github.io/slamdunk/images/slamdunk_logo_light.png" width="300" title="Slamdunk">

### Streamlining SLAM-Seq analysis with ultra-high sensitivity.

[![GitHub release](https://img.shields.io/github/release/t-neumann/slamdunk.svg)](https://github.com/t-neumann/slamdunk/releases/latest) [![Travis CI](https://img.shields.io/travis/t-neumann/slamdunk.svg)](https://travis-ci.org/t-neumann/slamdunk)

[![Docker Pulls](https://img.shields.io/docker/pulls/tobneu/slamdunk.svg)](https://hub.docker.com/r/tobneu/slamdunk) [![Docker Automated build](https://img.shields.io/docker/automated/tobneu/slamdunk.svg)](https://hub.docker.com/r/tobneu/slamdunk/builds/)

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io/recipes/slamdunk/README.html) [![Anaconda build](https://anaconda.org/bioconda/slamdunk/badges/version.svg )](https://anaconda.org/bioconda/slamdunk) [![Anaconda downloads](https://anaconda.org/bioconda/slamdunk/badges/downloads.svg )](https://anaconda.org/bioconda/slamdunk)

[![PyPI release](https://img.shields.io/pypi/v/slamdunk.svg)](https://pypi.python.org/pypi/slamdunk) ![Github Stars](https://img.shields.io/github/stars/t-neumann/slamdunk.svg?style=social&label=Star)

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### Slamdunk documentation

http://t-neumann.github.io/slamdunk

### Please cite

Neumann, T., Herzog, V. A., Muhar, M., Haeseler, von, A., Zuber, J., Ameres, S. L., & Rescheneder, P. (2019). [Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2849-7). BMC Bioinformatics, 20(1), 258. http://doi.org/10.1186/s12859-019-2849-7

package slamdunk

(downloads) docker_slamdunk

Versions
0.4.3-00.4.2-10.4.2-00.4.1-00.4.0-10.4.0-00.3.4-10.3.4-00.3.3-0

0.4.3-00.4.2-10.4.2-00.4.1-00.4.0-10.4.0-00.3.4-10.3.4-00.3.3-00.3.2-10.3.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install slamdunk

and update with:

conda update slamdunk

or use the docker container:

docker pull quay.io/biocontainers/slamdunk:<tag>

(see slamdunk/tags for valid values for <tag>)