- recipe slamdunk
Slamdunk is a software tool for SLAMseq data analysis.
- Homepage:
- Documentation:
- Developer docs:
- License:
AGPL / GNU Affero General Public License v3 (AGPLv3)
- Recipe:
- Links:
<img src="http://t-neumann.github.io/slamdunk/images/slamdunk_logo_light.png" width="300" title="Slamdunk">
### Streamlining SLAM-Seq analysis with ultra-high sensitivity.
[](https://github.com/t-neumann/slamdunk/releases/latest) [](https://travis-ci.org/t-neumann/slamdunk)
[](https://hub.docker.com/r/tobneu/slamdunk) [](https://hub.docker.com/r/tobneu/slamdunk/builds/)
[](http://bioconda.github.io/recipes/slamdunk/README.html) [](https://anaconda.org/bioconda/slamdunk) [](https://anaconda.org/bioconda/slamdunk)
[](https://pypi.python.org/pypi/slamdunk) 
-----
### Slamdunk documentation
http://t-neumann.github.io/slamdunk
### Please cite
Neumann, T., Herzog, V. A., Muhar, M., Haeseler, von, A., Zuber, J., Ameres, S. L., & Rescheneder, P. (2019). [Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2849-7). BMC Bioinformatics, 20(1), 258. http://doi.org/10.1186/s12859-019-2849-7
- package slamdunk¶
-
- Versions:
0.4.3-0
,0.4.2-1
,0.4.2-0
,0.4.1-0
,0.4.0-1
,0.4.0-0
,0.3.4-1
,0.3.4-0
,0.3.3-0
,0.4.3-0
,0.4.2-1
,0.4.2-0
,0.4.1-0
,0.4.0-1
,0.4.0-0
,0.3.4-1
,0.3.4-0
,0.3.3-0
,0.3.2-1
,0.3.2-0
- Depends:
biopython
>=1.74
intervaltree
>=3.0.2
joblib
>=0.14.0
nextgenmap
0.5.5.*
pandas
>=0.25.3
pybedtools
>=0.8.0
python
>=3
r-matrixstats
>=0.55.0
r-tidyverse
>=1.3.0
samtools
>=1.9
varscan
2.4.4.*
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install slamdunk
and update with:
conda update slamdunk
or use the docker container:
docker pull quay.io/biocontainers/slamdunk:<tag>
(see slamdunk/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/slamdunk/README.html)