recipe slamdunk

SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducible SLAMseq data analysis.

Homepage

http://t-neumann.github.io/slamdunk

License

GNU Affero General Public License v3 (AGPLv3)

Recipe

/slamdunk/meta.yaml

package slamdunk

Versions

0.3.4-0, 0.3.3-0, 0.3.2-1, 0.3.2-0

Depends

• biopython >=1.63

• bzip2 >=1.0.6,<2.0a0

• curl >=7.64.0,<8.0a0

• cython >=0.20.1

• intervaltree >=2.1.0

• joblib >=0.9.4

• libdeflate >=1.0,<1.1.0a0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• ncurses >=6.1,<6.2.0a0

• openjdk

• pandas >=0.13.1

• pybedtools >=0.6.4

• pysam >=0.8.3

• python >=2.7,<2.8.0a0

• r-base >=3.5.1,<3.5.2.0a0

• r-tidyverse

• xz >=5.2.4,<5.3.0a0

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install slamdunk

and update with:

conda update slamdunk

or use the docker container:

docker pull quay.io/biocontainers/slamdunk:<tag>

(see slamdunk/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/slamdunk/README.html)