recipe slncky

slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA orthologs, and characterizes conserved lncRNA evolution. slncky was developed as a collaboration between the Garber Lab at UMass Medical and the Regev Lab at the Broad Institute.

Homepage:

https://github.com/slncky/slncky

License:

MIT / MIT

Recipe:

/slncky/meta.yaml

package slncky

Versions:

1.0.4-2,  1.0.4-1,  1.0.4-0,  1.0.3-0

Depends:

• bedtools >=2.17.0,<=2.24.0

• lastz

• numpy

• python <3

• ucsc-liftover

Required By:

• ctat-lncrna

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install slncky

and update with:

conda update slncky

or use the docker container:

docker pull quay.io/biocontainers/slncky:<tag>

(see slncky/tags for valid values for <tag>)

Download stats

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