recipe slncky

slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA orthologs, and characterizes conserved lncRNA evolution. slncky was developed as a collaboration between the Garber Lab at UMass Medical and the Regev Lab at the Broad Institute.

Homepage

https://github.com/slncky/slncky

License

MIT / MIT

Recipe

/slncky/meta.yaml

package slncky

(downloads) docker_slncky

Versions

1.0.4-1, 1.0.4-0, 1.0.3-0

Depends bedtools

>=2.17.0,<=2.24.0

Depends lastz

Depends numpy

Depends python

<3

Depends ucsc-liftover

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install slncky

and update with:

conda update slncky

or use the docker container:

docker pull quay.io/biocontainers/slncky:<tag>

(see slncky/tags for valid values for <tag>)