recipe sloika

Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling

Homepage:

https://github.com/nanoporetech/sloika

License:

OTHER / Mozilla Public License 2.0 (MPL 2.0)

Recipe:

/sloika/meta.yaml

package sloika

versions:

2.0.1-0

depends biopython:

>=1.63

depends h5py:

>=2.2.1,<=2.6.0

depends hdf5:

1.8.17*

depends libgcc:

depends numpy:

1.12*

depends theano:

0.8.2

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sloika

and update with::

   mamba update sloika

To create a new environment, run:

mamba create --name myenvname sloika

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sloika:<tag>

(see `sloika/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sloika/README.html)