recipe slow5curl

Tool for accessing remote BLOW5 files.

Homepage:

https://github.com/BonsonW/slow5curl

License:

MIT

Recipe:

/slow5curl/meta.yaml

slow5curl is a command line tool for fetching reads from remote BLOW5 files, which is built on top of slow5lib and libcurl.

package slow5curl

(downloads) docker_slow5curl

versions:

0.2.1-0,  0.2.0-0

depends curl:

depends libgcc-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install slow5curl

and update with::

   mamba update slow5curl

To create a new environment, run:

mamba create --name myenvname slow5curl

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/slow5curl:<tag>

(see `slow5curl/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/slow5curl/README.html)