- recipe smaca
smaca is a python tool to detect putative SMA carriers and estimate the absolute SMN1 copy-number in a population.
- package smaca¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install smaca and update with:: mamba update smaca
To create a new environment, run:
mamba create --name myenvname smaca
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/smaca:<tag> (see `smaca/tags`_ for valid values for ``<tag>``)