recipe smallgenomeutilities/0.2.1

A collection of scripts that are useful for dealing with viral RNA NGS data.

Homepage:

https://github.com/cbg-ethz/smallgenomeutilities

License:

GPL2 / GNU General Public License v2 or later (GPLv2+)

Recipe:

/smallgenomeutilities/0.2.1/meta.yaml

package smallgenomeutilities

Versions:

0.3.6-0,  0.3.5-0,  0.3.4-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.1-2,  0.2.1-1,  0.2.1-0, 

0.3.6-0,  0.3.5-0,  0.3.4-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.1-2,  0.2.1-1,  0.2.1-0,  0.1-1,  0.1-0

Depends:

• bcbio-gff

• biopython

• mafft

• matplotlib-base

• numpy

• pandas

• progress

• pysam >=0.16

• pysamstats

• python >=3.6

• pyyaml

• scikit-learn

• scipy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install smallgenomeutilities

and update with:

conda update smallgenomeutilities

or use the docker container:

docker pull quay.io/biocontainers/smallgenomeutilities:<tag>

(see smallgenomeutilities/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/smallgenomeutilities/README.html)