recipe smashbenchmarking

Check the accuracy of one VCF callset against another

Homepage:

http://github.com/amplab/smash/

License:

BSD License

Recipe:

/smashbenchmarking/meta.yaml

package smashbenchmarking

(downloads) docker_smashbenchmarking

versions:

1.0.1-0

depends numpy:

depends pyfasta:

depends python:

2.7*

depends pyvcf:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install smashbenchmarking

and update with::

   mamba update smashbenchmarking

To create a new environment, run:

mamba create --name myenvname smashbenchmarking

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/smashbenchmarking:<tag>

(see `smashbenchmarking/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/smashbenchmarking/README.html)