smeg

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Strain-level MEtagenomic Growth estimation (SMEG) measures growth rates of microbial strains from complex metagenomic dataset at low coverage (1X)

Home https://github.com/ohlab/SMEG
Versions 1.0.1
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/smeg

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install smeg

and update with:

conda update smeg

docker

A Docker container is available at https://quay.io/repository/biocontainers/smeg.