recipe smeg

Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset

Homepage:

https://github.com/ohlab/SMEG

License:

MIT

Recipe:

/smeg/meta.yaml

package smeg

Versions:

1.1.5-2,  1.1.5-1,  1.1.5-0,  1.1.4-1,  1.1.4-0,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1-1, 

1.1.5-2,  1.1.5-1,  1.1.5-0,  1.1.4-1,  1.1.4-0,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1-1,  1.1-0,  1.0.1-2,  1.0.1-1,  1.0.1-0

Depends:

• bamtools

• bedtools

• blast

• bowtie2

• libgenome

• mauve

• openssl >=1.1.0,<=1.1.1

• parallel

• prokka

• r-ape

• r-data.table

• r-dplyr

• r-dynamictreecut

• r-getopt

• r-ggplot2

• r-gplots

• r-gsubfn

• r-seqinr

• readline >=6.2

• roary

• samtools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install smeg

and update with:

conda update smeg

or use the docker container:

docker pull quay.io/biocontainers/smeg:<tag>

(see smeg/tags for valid values for <tag>)

Download stats

Link to this page

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