recipe snakedeploy

Helper for deploying published Snakemake pipelines

Homepage:

https://github.com/snakemake/snakedeploy

License:

MPL-2.0

Recipe:

/snakedeploy/meta.yaml

package snakedeploy

versions:

0.10.0-0,  0.9.1-0,  0.8.6-0,  0.8.5-0,  0.8.4-0,  0.8.3-0,  0.8.2-0,  0.8.1-0,  0.8.0-0, 

0.10.0-0,  0.9.1-0,  0.8.6-0,  0.8.5-0,  0.8.4-0,  0.8.3-0,  0.8.2-0,  0.8.1-0,  0.8.0-0,  0.7.1-0,  0.7.0-0,  0.6.0-0,  0.5.0-0,  0.4.0-0,  0.3.0-0,  0.2.1-0,  0.1.3-0,  0.1.1-1

depends jinja2:

depends packaging:

depends pandas:

depends pygithub:

depends python:

>=3.8

depends pyyaml:

depends requests:

depends reretry:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install snakedeploy

and update with::

   mamba update snakedeploy

To create a new environment, run:

mamba create --name myenvname snakedeploy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/snakedeploy:<tag>

(see `snakedeploy/tags`_ for valid values for ``<tag>``)

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