recipe snakemake-storage-plugin-fs

A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync

Homepage:

https://github.com/snakemake/snakemake-storage-plugin-fs

License:

MIT / MIT

Recipe:

/snakemake-storage-plugin-fs/meta.yaml

package snakemake-storage-plugin-fs

versions:

1.0.4-0,  1.0.3-0,  1.0.0-0,  0.2.0-0,  0.1.5-0

depends python:

>=3.11.0,<4.0.0

depends reretry:

>=0.11.8,<0.12.0

depends snakemake-interface-common:

>=1.17.0,<2.0.0

depends snakemake-interface-storage-plugins:

>=3.1.0,<4.0.0

depends sysrsync:

>=1.1.1,<2.0.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install snakemake-storage-plugin-fs

and update with::

   mamba update snakemake-storage-plugin-fs

To create a new environment, run:

mamba create --name myenvname snakemake-storage-plugin-fs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/snakemake-storage-plugin-fs:<tag>

(see `snakemake-storage-plugin-fs/tags`_ for valid values for ``<tag>``)

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