recipe snap-aligner

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

Homepage:

http://snap.cs.berkeley.edu/

Developer docs:

https://github.com/amplab/snap/

License:

Apache v2

Recipe:

/snap-aligner/meta.yaml

package snap-aligner

(downloads) docker_snap-aligner

versions:
2.0.3-3,  2.0.3-2,  2.0.3-1,  2.0.3-0,  2.0.2-0,  2.0.1-1,  2.0.1-0,  2.0.0-1,  2.0.0-0, 

2.0.3-3,  2.0.3-2,  2.0.3-1,  2.0.3-0,  2.0.2-0,  2.0.1-1,  2.0.1-0,  2.0.0-1,  2.0.0-0,  1.0beta.23-0,  1.0beta.18-0,  1.0dev.97-3,  1.0dev.97-2,  1.0dev.97-1,  1.0dev.97-0,  1.0dev.96-3,  1.0dev.96-2,  1.0dev.96-1,  1.0dev.96-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install snap-aligner

and update with::

   mamba update snap-aligner

To create a new environment, run:

mamba create --name myenvname snap-aligner

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/snap-aligner:<tag>

(see `snap-aligner/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/snap-aligner/README.html)