recipe snaptools

A module for working with snap files in Python

Homepage:

https://github.com/r3fang/SnapTools.git

License:

OTHER / LICENSE

Recipe:

/snaptools/meta.yaml

package snaptools

versions:

1.4.8-1,  1.4.8-0

depends future:

depends h5py:

depends numpy:

depends pybedtools:

>=0.7

depends pysam:

depends python:

depends python-louvain:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install snaptools

and update with::

   mamba update snaptools

To create a new environment, run:

mamba create --name myenvname snaptools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/snaptools:<tag>

(see `snaptools/tags`_ for valid values for ``<tag>``)

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/snaptools/README.html)