recipe sniffles

Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore)

Homepage:

https://github.com/fritzsedlazeck/Sniffles

License:

MIT / MIT

Recipe:

/sniffles/meta.yaml

package sniffles

Versions:

2.0.7-0,  2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.3-0,  2.0.2-0,  1.0.12-1,  1.0.12-0,  1.0.11-1, 

2.0.7-0,  2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.3-0,  2.0.2-0,  1.0.12-1,  1.0.12-0,  1.0.11-1,  1.0.11-0,  1.0.10-0,  1.0.8-0,  1.0.7-1,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.3-0

Depends:

• pysam

• python >=3.7

Required By:

• telr

• duet

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install sniffles

and update with:

conda update sniffles

or use the docker container:

docker pull quay.io/biocontainers/sniffles:<tag>

(see sniffles/tags for valid values for <tag>)

Download stats

Link to this page

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