recipe snipe

SRA-Scale sequence QC and analysis

Homepage:

https://github.com/snipe-bio/snipe

License:

AGPL / AGPL-3.0-or-later

Recipe:

/snipe/meta.yaml

package snipe

versions:

0.1.6-0,  0.1.5-0,  0.1.4-0,  0.1.3-0

depends click:

>=8.0.0

depends lzstring:

depends numpy:

>=1.22,<2

depends pandas:

depends pathos:

depends pyfastx:

>=2.1.0,<3.0a0

depends python:

>=3.7,<3.12

depends rapidfuzz:

depends requests:

>=2.25.1

depends sourmash:

>=4.8.11

depends tqdm:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install snipe

and update with::

   mamba update snipe

To create a new environment, run:

mamba create --name myenvname snipe

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/snipe:<tag>

(see `snipe/tags`_ for valid values for ``<tag>``)

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