recipe snk-cli

Dynamically generate CLIs from Snakemake configuration files

Homepage:

https://github.com/wytamma/snk-cli

License:

MIT

Recipe:

/snk-cli/meta.yaml

package snk-cli

versions:

0.7.0-1,  0.7.0-0,  0.5.5-0,  0.5.4-0,  0.5.2-0

depends ascii-art:

>=5.9,<6.dev0

depends datrie:

>=0.8.2

depends graphviz:

>=2.38.0

depends makefun:

>=1.15,<2.dev0

depends pulp:

<2.8

depends python:

>=3.8

depends rich:

>=10.11.0

depends shellingham:

>=1.3.0

depends snakemake-minimal:

>=7

depends typer:

>=0.9,<1.dev0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install snk-cli

and update with::

   mamba update snk-cli

To create a new environment, run:

mamba create --name myenvname snk-cli

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/snk-cli:<tag>

(see `snk-cli/tags`_ for valid values for ``<tag>``)

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