recipe snostrip

Automatic snoRNA annotation pipeline

Homepage:

http://snostrip.bioinf.uni-leipzig.de/help.py

License:

GPL3

Recipe:

/snostrip/meta.yaml

package snostrip

versions:

2.0.2-6,  2.0.2-5,  2.0.2-4,  2.0.2-3,  2.0.2-2,  2.0.2-1,  2.0.2-0

depends blast-legacy:

>=2.2.26,<3.0a0

depends infernal:

>=1.1.5,<2.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends muscle:

>=5.3,<5.4.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends viennarna:

>=2.7.0,<2.8.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install snostrip

and update with::

   mamba update snostrip

To create a new environment, run:

mamba create --name myenvname snostrip

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/snostrip:<tag>

(see `snostrip/tags`_ for valid values for ``<tag>``)

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