snpsplit

downloads

SNPsplit is an allele-specific alignment sorter which is designed to read in alignment files in SAM/BAM format and determine the allelic origin of reads that cover known SNP positions.

Home https://www.bioinformatics.babraham.ac.uk/projects/SNPsplit/
Versions 0.3.4, 0.3.3
License GNU General Public License v3 (GPLv3)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/snpsplit
Links doi: 10.12688/f1000research.9037.2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install snpsplit

and update with:

conda update snpsplit

docker

A Docker container is available at https://quay.io/repository/biocontainers/snpsplit.