recipe snvphyl-tools

The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying Single Nucleotide Variants (SNV) within a collection of microbial genomes and constructing a phylogenetic tree

Homepage:

https://github.com/phac-nml/snvphyl-tools

License:

apache_2.0

Recipe:

/snvphyl-tools/meta.yaml

package snvphyl-tools

Versions:

1.8.2-7,  1.8.2-6,  1.8.2-5,  1.8.2-4,  1.8.2-3,  1.8.2-2,  1.8.2-1,  1.8.2-0,  1.8.1-0

Depends:

• bcftools-snvphyl-plugin >=1.9

• grep

• libgcc-ng >=10.3.0

• mummer

• perl >=5.32.1,<5.33.0a0 *_perl5

• perl-bioperl >=1.7.2

• perl-hash-merge

• perl-list-moreutils

• perl-math-round

• perl-parallel-forkmanager

• perl-string-util

• perl-text-csv

• perl-vcftools-vcf

• samtools >=1.9

• vcftools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install snvphyl-tools

and update with:

conda update snvphyl-tools

or use the docker container:

docker pull quay.io/biocontainers/snvphyl-tools:<tag>

(see snvphyl-tools/tags for valid values for <tag>)

Download stats

Link to this page

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