- recipe snvphyl-tools
The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying Single Nucleotide Variants (SNV) within a collection of microbial genomes and constructing a phylogenetic tree
- Homepage:
- License:
apache_2.0
- Recipe:
- package snvphyl-tools¶
-
- Versions:
1.8.2-7
,1.8.2-6
,1.8.2-5
,1.8.2-4
,1.8.2-3
,1.8.2-2
,1.8.2-1
,1.8.2-0
,1.8.1-0
- Depends:
bcftools-snvphyl-plugin
>=1.9
libgcc-ng
>=10.3.0
perl
>=5.32.1,<5.33.0a0 *_perl5
perl-bioperl
>=1.7.2
samtools
>=1.9
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install snvphyl-tools
and update with:
conda update snvphyl-tools
or use the docker container:
docker pull quay.io/biocontainers/snvphyl-tools:<tag>
(see snvphyl-tools/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/snvphyl-tools/README.html)