recipe sodar-cli

Command line interface to SODAR via REST API

Homepage:

https://github.com/bihealth/sodar-cli

License:

MIT / MIT

Recipe:

/sodar-cli/meta.yaml

package sodar-cli

versions:

0.1.0-0

depends attrs:

depends cattrs:

depends logzero:

depends python:

>=3

depends python-dateutil:

depends python-levenshtein:

depends requests:

depends simplejson:

depends tabulate:

depends toml:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sodar-cli

and update with::

   mamba update sodar-cli

To create a new environment, run:

mamba create --name myenvname sodar-cli

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sodar-cli:<tag>

(see `sodar-cli/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sodar-cli/README.html)