recipe somaticseq

An ensemble approach to accurately detect somatic mutations

Homepage

http://bioinform.github.io/somaticseq/

License

2-clause BSD

Recipe

/somaticseq/meta.yaml

SomaticSeq is an ensemble caller that has the ability to use machine learning to filter out false positives. The detailed documentation is included in the package, located in docs/Manual.pdf. A quick guide can also be found here. SomaticSeq’s open-access paper: Fang LT, Afshar PT, Chhibber A, et al. An ensemble approach to accurately detect somatic mutations using SomaticSeq. Genome Biol. 2015;16:197.

package somaticseq

(downloads) docker_somaticseq

Versions

2.8.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install somaticseq

and update with:

conda update somaticseq

or use the docker container:

docker pull quay.io/biocontainers/somaticseq:<tag>

(see somaticseq/tags for valid values for <tag>)