recipe sonicparanoid

SonicParanoid: fast, easy and accurate orthology inference

Homepage

http://iwasakilab.bs.s.u-tokyo.ac.jp/sonicparanoid/

License

GPL3 / GNU General Public License v3

Recipe

/sonicparanoid/meta.yaml

Links

doi: 10.1093/bioinformatics/bty631

package sonicparanoid

(downloads) docker_sonicparanoid

Versions

1.0.14-0, 1.0.13-0

Depends biopython

>=1.67

Depends cython

>=0.27.0

Depends libstdcxx-ng

>=4.9

Depends make

Depends mmseqs2

6.f5a1c

Depends numpy

>=1.13.0

Depends pandas

>=0.22.0

Depends pip

>=9.0.1

Depends python

>=3.7,<3.8.0a0

Depends setuptools

>=24.2.0

Depends sh

>=1.12.14

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sonicparanoid

and update with:

conda update sonicparanoid

or use the docker container:

docker pull quay.io/biocontainers/sonicparanoid:<tag>

(see sonicparanoid/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sonicparanoid/README.html)