recipe sonicparanoid

SonicParanoid: fast, easy and accurate orthology inference

Homepage

http://iwasakilab.bs.s.u-tokyo.ac.jp/sonicparanoid/

License

GPL3 / GNU General Public License v3

Recipe

/sonicparanoid/meta.yaml

Links

doi: 10.1093/bioinformatics/bty631

package sonicparanoid

Versions

1.0.14-3,  1.0.14-2,  1.0.14-1,  1.0.14-0,  1.0.13-0

Depends

• biopython >=1.67

• cython

• gcc_linux-64 7.*

• gxx_linux-64 7.*

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• make

• mmseqs2 6.f5a1c

• numpy >=1.13.0

• pandas >=0.22.0

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• sh >=1.12.14

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sonicparanoid

and update with:

conda update sonicparanoid

or use the docker container:

docker pull quay.io/biocontainers/sonicparanoid:<tag>

(see sonicparanoid/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sonicparanoid/README.html)