- recipe sonicparanoid
SonicParanoid: fast, easy and accurate orthology inference
- Homepage:
- License:
GPL3 / GNU General Public License v3
- Recipe:
- Links:
- package sonicparanoid¶
-
- Versions:
1.3.8-2
,1.3.8-1
,1.3.8-0
,1.3.7-0
,1.3.6-1
,1.3.6-0
,1.0.14-4
,1.0.14-3
,1.0.14-2
,1.3.8-2
,1.3.8-1
,1.3.8-0
,1.3.7-0
,1.3.6-1
,1.3.6-0
,1.0.14-4
,1.0.14-3
,1.0.14-2
,1.0.14-1
,1.0.14-0
,1.0.13-0
- Depends:
biopython
>=1.79
blast
>=2.12.0
diamond
>=2.0.12
filetype
>=1.0.7
libgcc-ng
>=10.3.0
libstdcxx-ng
>=10.3.0
mcl
>=14.137
mmseqs2
>=13.45111
numpy
>=1.21
pandas
>=1.3.2
psutil
>=5.8.0
python
>=3.7,<3.8.0a0
python_abi
3.7.* *_cp37m
scikit-learn
>=0.24.2
scipy
>=1.7.1
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install sonicparanoid
and update with:
conda update sonicparanoid
or use the docker container:
docker pull quay.io/biocontainers/sonicparanoid:<tag>
(see sonicparanoid/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/sonicparanoid/README.html)