recipe sonicparanoid

SonicParanoid: fast, easy and accurate orthology inference

Homepage

http://iwasakilab.bs.s.u-tokyo.ac.jp/sonicparanoid/

License

GPL3 / GNU General Public License v3

Recipe

/sonicparanoid/meta.yaml

Links

doi: 10.1093/bioinformatics/bty631

package sonicparanoid

Versions

1.3.8-0,  1.3.7-0,  1.3.6-1,  1.3.6-0,  1.0.14-4,  1.0.14-3,  1.0.14-2,  1.0.14-1,  1.0.14-0, 

1.3.8-0,  1.3.7-0,  1.3.6-1,  1.3.6-0,  1.0.14-4,  1.0.14-3,  1.0.14-2,  1.0.14-1,  1.0.14-0,  1.0.13-0

Depends

• biopython >=1.79

• blast 2.12.0

• diamond 2.0.12

• filetype 1.0.7

• libgcc-ng >=9.4.0

• libstdcxx-ng >=9.4.0

• mcl 14.137

• mmseqs2 13.45111

• numpy >=1.21

• pandas >=1.3.2

• psutil >=5.8.0

• python >=3.8,<3.9.0a0

• scikit-learn >=0.24.2

• scipy >=1.7.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sonicparanoid

and update with:

conda update sonicparanoid

or use the docker container:

docker pull quay.io/biocontainers/sonicparanoid:<tag>

(see sonicparanoid/tags for valid values for <tag>)

Download stats

Link to this page

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