recipe sonicparanoid

SonicParanoid: fast, easy and accurate orthology inference

Homepage:

http://iwasakilab.bs.s.u-tokyo.ac.jp/sonicparanoid/

License:

GPL3 / GNU General Public License v3

Recipe:

/sonicparanoid/meta.yaml

Links:

doi: 10.1093/bioinformatics/bty631

package sonicparanoid

Versions:

1.3.8-2,  1.3.8-1,  1.3.8-0,  1.3.7-0,  1.3.6-1,  1.3.6-0,  1.0.14-4,  1.0.14-3,  1.0.14-2, 

1.3.8-2,  1.3.8-1,  1.3.8-0,  1.3.7-0,  1.3.6-1,  1.3.6-0,  1.0.14-4,  1.0.14-3,  1.0.14-2,  1.0.14-1,  1.0.14-0,  1.0.13-0

Depends:

• biopython >=1.79

• blast >=2.12.0

• diamond >=2.0.12

• filetype >=1.0.7

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• mcl >=14.137

• mmseqs2 >=13.45111

• numpy >=1.21

• pandas >=1.3.2

• psutil >=5.8.0

• python >=3.7,<3.8.0a0

• python_abi 3.7.* *_cp37m

• scikit-learn >=0.24.2

• scipy >=1.7.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install sonicparanoid

and update with:

conda update sonicparanoid

or use the docker container:

docker pull quay.io/biocontainers/sonicparanoid:<tag>

(see sonicparanoid/tags for valid values for <tag>)

Download stats

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