recipe spaln

Map and align a set of cDNA/EST or protein sequences onto a genome

Homepage:

http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln/

Developer docs:

https://github.com/ogotoh/spaln

License:

GPL / GPL-2.0

Recipe:

/spaln/meta.yaml

Links:

doi: 10.1093/nar/gks708

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. Spaln also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

package spaln

(downloads) docker_spaln

Versions:
2.4.13-02.4.9-02.4.8-02.4.7-22.4.7-12.4.7-02.4.6-12.4.6-02.4.5-0

2.4.13-02.4.9-02.4.8-02.4.7-22.4.7-12.4.7-02.4.6-12.4.6-02.4.5-02.4.4-02.4.03-12.4.03-02.4.02-02.4.01-02.3.3-02.3.3c-02.3.3b-02.3.3a-02.3.2-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install spaln

and update with:

conda update spaln

or use the docker container:

docker pull quay.io/biocontainers/spaln:<tag>

(see spaln/tags for valid values for <tag>)

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