spaln

downloads

Map and align a set of cDNA/EST or protein sequences onto a genome

Home http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln/
Versions 2.3.2
License GPL-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/spaln
Development https://github.com/ogotoh/spaln

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. Spaln also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install spaln

and update with:

conda update spaln

docker

A Docker container is available at https://quay.io/repository/biocontainers/spaln.