- recipe spapros
Probe set selection for targeted spatial transcriptomics.
- Homepage:
- License:
MIT
- Recipe:
- package spapros¶
- versions:
0.1.5-0- depends bandit:
>=1.7.6- depends click:
>=8.0.1- depends jinja2:
>=3.0.1- depends jupyter-sphinx:
>=0.3.2- depends leidenalg:
>=0.8.7- depends matplotlib-base:
>=3.6.3- depends nox:
>=2023.04.22- depends nox-poetry:
>=1.0.3- depends numpy:
1.26.4- depends pandas:
>=1.3.0,<2.0.0- depends pandoc:
>=2.1- depends pillow:
>=10.0.2- depends python:
>=3.9,<3.10- depends pyyaml:
>=6.0.1- depends questionary:
>=1.10.0- depends rich:
>=10.1.0- depends ruamel.yaml:
>=0.17.10- depends scanpy:
>=1.9.8- depends seaborn:
>=0.11.1- depends upsetplot:
>=0.7.0- depends venndata:
>=0.1.0- depends xgboost:
>=1.6.1- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install spapros and update with:: mamba update spapros
To create a new environment, run:
mamba create --name myenvname spapros
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/spapros:<tag> (see `spapros/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/spapros/README.html)
