recipe spatialleiden

Implementation of multiplex Leiden for analysis of spatial omics data.

Homepage:

https://github.com/HiDiHlabs/SpatialLeiden

Documentation:

https://spatialleiden.readthedocs.io/

License:

MIT / MIT

Recipe:

/spatialleiden/meta.yaml

package spatialleiden

(downloads) docker_spatialleiden

versions:

0.1.1-0

depends anndata:

depends igraph:

depends leidenalg:

>=0.10.2,<0.11.dev0

depends numpy:

>=1.21

depends python:

>=3.10

depends scanpy:

depends scipy:

>=1.9

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install spatialleiden

and update with::

   mamba update spatialleiden

To create a new environment, run:

mamba create --name myenvname spatialleiden

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/spatialleiden:<tag>

(see `spatialleiden/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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