recipe spec2vec

Word2Vec based similarity measure of mass spectrometry data.

Homepage:

https://github.com/iomega/spec2vec

Documentation:

https://spec2vec.readthedocs.io/en/latest

License:

APACHE / Apache-2.0

Recipe:

/spec2vec/meta.yaml

Links:

doi: 10.1371/journal.pcbi.1008724

package spec2vec

versions:

0.8.0-1,  0.8.0-0,  0.6.0-0

depends fuzzytm:

depends gensim:

>=4.2.0

depends matchms:

>=0.14.0,<=0.26.4

depends numba:

>=0.51

depends numpy:

depends python:

>=3.7

depends scipy:

<=1.10.1

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install spec2vec

and update with::

   mamba update spec2vec

To create a new environment, run:

mamba create --name myenvname spec2vec

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/spec2vec:<tag>

(see `spec2vec/tags`_ for valid values for ``<tag>``)

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