recipe splash

Unsupervised and reference-free unifying framework to discover regulated sequence variation through statistical analysis of k-mer composition in both DNA and RNA sequence.

Homepage:

https://github.com/refresh-bio/splash

License:

GPL3 / GPL-3.0-or-later

Recipe:

/splash/meta.yaml

Links:

doi: 10.1038/s41587-024-02381-2

package splash

(downloads) docker_splash

versions:

2.11.0-0

depends python:

>=3.13,<3.14.0a0

depends python_abi:

3.13.* *_cp313

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install splash

and update with::

   mamba update splash

To create a new environment, run:

mamba create --name myenvname splash

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/splash:<tag>

(see `splash/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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