- recipe splicemap
Detects splice junctions from RNA-seq data. This method does not depend on any existing annotation of gene structures and is capable of finding novel splice junctions with high sensitivity and specificity. It can handle long reads (50–100 nt) and can exploit paired-read information to improve mapping accuracy.
- Homepage:
- License:
file
- Recipe:
- Links:
biotools: splicemap, doi: 10.1093/nar/gkq211
- package splicemap¶
-
- Versions:
3.3.5.2-4
,3.3.5.2-3
,3.3.5.2-2
,3.3.5.2-1
,3.3.5.2-0
- Depends:
libgcc-ng
>=10.3.0
libstdcxx-ng
>=10.3.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install splicemap
and update with:
conda update splicemap
or use the docker container:
docker pull quay.io/biocontainers/splicemap:<tag>
(see splicemap/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/splicemap/README.html)