recipe splicemap

Detects splice junctions from RNA-seq data. This method does not depend on any existing annotation of gene structures and is capable of finding novel splice junctions with high sensitivity and specificity. It can handle long reads (50–100 nt) and can exploit paired-read information to improve mapping accuracy.

Homepage:

http://www.stanford.edu/group/wonglab/SpliceMap/

License:

file

Recipe:

/splicemap/meta.yaml

Links:

biotools: splicemap, doi: 10.1093/nar/gkq211

package splicemap

(downloads) docker_splicemap

Versions:

3.3.5.2-43.3.5.2-33.3.5.2-23.3.5.2-13.3.5.2-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install splicemap

and update with:

conda update splicemap

or use the docker container:

docker pull quay.io/biocontainers/splicemap:<tag>

(see splicemap/tags for valid values for <tag>)

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