recipe spydrpick

Mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure

Homepage:

https://github.com/santeripuranen/SpydrPick

License:

GNU Affero General Public License

Recipe:

/spydrpick/meta.yaml

Links:

doi: 10.1093/nar/gkz656

package spydrpick

(downloads) docker_spydrpick

versions:

1.2.0-0,  1.1.1-0,  1.1.0-0,  1.0.0-0

depends libgcc-ng:

>=7.3.0

depends libstdcxx-ng:

>=7.3.0

depends pthread-stubs:

depends tbb:

>=2019.9,<2021.0.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install spydrpick

and update with::

   mamba update spydrpick

To create a new environment, run:

mamba create --name myenvname spydrpick

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/spydrpick:<tag>

(see `spydrpick/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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