recipe sqt

Command-line tools for the analysis of high-throughput sequencing data

Homepage:

https://bitbucket.org/marcelm/sqt

License:

MIT

Recipe:

/sqt/meta.yaml

package sqt

versions:

0.8.0-5,  0.8.0-4,  0.8.0-3,  0.8.0-2,  0.8.0-0,  0.7.0-2,  0.7.0-1,  0.7.0-0,  0.6.3-0, 

0.8.0-5,  0.8.0-4,  0.8.0-3,  0.8.0-2,  0.8.0-0,  0.7.0-2,  0.7.0-1,  0.7.0-0,  0.6.3-0,  0.6.1-0

depends cutadapt:

depends libgcc-ng:

>=12

depends matplotlib:

depends pysam:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends seaborn:

depends xopen:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sqt

and update with::

   mamba update sqt

To create a new environment, run:

mamba create --name myenvname sqt

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sqt:<tag>

(see `sqt/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sqt/README.html)