recipe squirrel

Some QUIck Reconstruction to Resolve Evolutionary Links

Homepage:

https://github.com/aineniamh/squirrel

License:

GPL3 / GPL-3.0-only

Recipe:

/squirrel/meta.yaml

package squirrel

versions:

1.0.12-0,  1.0.11-0,  1.0.10-1,  1.0.10-0,  1.0.9-0,  1.0.8-0,  1.0.7-0

depends baltic:

depends biopython:

>=1.74

depends gofasta:

depends iqtree:

>=2.1

depends jclusterfunk:

>=0.0.25

depends mako:

depends matplotlib-base:

>=3.3.1

depends minimap2:

>=2.16

depends pandas:

depends python:

3.10

depends seaborn:

depends snakemake-minimal:

7.32

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install squirrel

and update with::

   mamba update squirrel

To create a new environment, run:

mamba create --name myenvname squirrel

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/squirrel:<tag>

(see `squirrel/tags`_ for valid values for ``<tag>``)

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