recipe srax

Systematic Resistome Analysis

Homepage

https://github.com/lgpdevtools/sraX

Documentation

https://github.com/lgpdevtools/sraX/blob/master/doc/sraX_user_manual.pdf

License

GPL-3.0-only

Recipe

/srax/meta.yaml

Links

doi: 10.3389/fmicb.2020.00052

package srax

Versions

1.5-0,  1.4-0

Depends

• blast >=2.9

• clustalo >=1.2.4

• diamond >=0.9.29

• mafft >=7.455

• muscle

• perl >=5.26.2,<5.26.3.0a0

• perl-env-path

• perl-file-path

• perl-file-slurp

• perl-file-temp

• perl-file-which

• perl-getopt-long

• perl-io-socket-ssl

• perl-json

• perl-list-moreutils

• perl-lwp-protocol-https

• perl-lwp-simple

• perl-net-ssleay

• perl-parallel-forkmanager

• perl-text-csv

• unzip

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install srax

and update with:

conda update srax

or use the docker container:

docker pull quay.io/biocontainers/srax:<tag>

(see srax/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/srax/README.html)