recipe srnapipe

Pipeline for bioinformatic in-depth exploration of small RNA-seq data

Homepage:

https://github.com/GReD-Clermont/sRNAPipe-cli

License:

Academic Free License v3.0

Recipe:

/srnapipe/meta.yaml

package srnapipe

Versions:

1.2-0,  1.1.1-3,  1.1.1-2,  1.1.1-1,  1.1.1-0,  1.1-3,  1.1-0

Depends:

• bedtools >=2.24.0

• bioconductor-sushi

• bwa >=0.7.12

• fonts-conda-ecosystem

• perl >=5.32.1,<6.0a0 *_perl5

• perl-file-copy-recursive

• perl-getopt-long

• perl-math-cdf

• perl-parallel-forkmanager

• perl-statistics-r

• perl-string-random

• r-base >=4.1,<4.2.0a0

• r-ggplot2

• r-plotrix

• r-rcolorbrewer

• samtools >=1.5

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install srnapipe

and update with:

conda update srnapipe

or use the docker container:

docker pull quay.io/biocontainers/srnapipe:<tag>

(see srnapipe/tags for valid values for <tag>)

Download stats

Link to this page

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