recipe srnapipe/1.1

Pipeline for bioinformatic in-depth exploration of small RNA-seq data

Homepage

https://github.com/GReD-Clermont/sRNAPipe-cli

License

Academic Free License v3.0

Recipe

/srnapipe/1.1/meta.yaml

package srnapipe

(downloads) docker_srnapipe

Versions

1.1-0

Depends bedtools

>=2.24.0

Depends bioconductor-sushi

Depends bwa

>=0.7.12

Depends perl

>=5.22.0.1,<5.22.1.0a0

Depends perl-file-copy-recursive

Depends perl-getopt-long

Depends perl-math-cdf

Depends perl-parallel-forkmanager

Depends perl-statistics-r

Depends perl-string-random

Depends r-base

>=3.4.1,<3.4.2.0a0

Depends r-ggplot2

Depends r-plotrix

Depends r-rcolorbrewer

Depends samtools

>=1.5

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install srnapipe

and update with:

conda update srnapipe

or use the docker container:

docker pull quay.io/biocontainers/srnapipe:<tag>

(see srnapipe/tags for valid values for <tag>)