recipe ssake

SSAKE is a genomics application for de novo assembly of millions of very short DNA sequences.

Homepage:

https://github.com/warrenlr/SSAKE

License:

GPL / GPL-2.0

Recipe:

/ssake/meta.yaml

Links:

biotools: ssake, doi: 10.1093/bioinformatics/btl629

package ssake

(downloads) docker_ssake

versions:

4.0-5,  4.0-4,  4.0-2,  4.0-1

depends perl:

depends perl-statistics-descriptive:

depends python:

<3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ssake

and update with::

   mamba update ssake

To create a new environment, run:

mamba create --name myenvname ssake

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ssake:<tag>

(see `ssake/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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