recipe ssdrippipeline

Useful tools for the analysis of ssDRIP-seq data

Homepage:

https://github.com/PEHGP/ssDripPipeline

Documentation:

https://github.com/PEHGP/ssDripPipeline/wiki

License:

GPL3

Recipe:

/ssdrippipeline/meta.yaml

package ssdrippipeline

Versions:

0.0.5-0

Depends:

• bedtools >=2.29.2

• bioconductor-deseq2 >=1.32.0

• bioconductor-mfuzz >=2.52.0

• biopython >=1.78

• bowtie2 >=2.3.5.1

• deeptools >=3.5.0

• homer >=4.11

• macs2 >=2.2.7.1

• matplotlib-base >=3.1.3

• numpy >=1.18.1

• pandas >=1.0.1

• picard >=2.24.2

• python >=3.7

• r-base >=4.1,<4.2.0a0

• r-gplots >=3.1.1

• samtools >=1.7

• scipy >=1.4.1

• seaborn >=0.10.0

• ucsc-bedgraphtobigwig

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ssdrippipeline

and update with:

conda update ssdrippipeline

or use the docker container:

docker pull quay.io/biocontainers/ssdrippipeline:<tag>

(see ssdrippipeline/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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