- recipe ssdrippipeline
Useful tools for the analysis of ssDRIP-seq data
- Homepage:
- Documentation:
- License:
GPL3
- Recipe:
- package ssdrippipeline¶
-
- Versions:
0.0.5-0
- Depends:
bedtools
>=2.29.2
bioconductor-deseq2
>=1.32.0
bioconductor-mfuzz
>=2.52.0
biopython
>=1.78
bowtie2
>=2.3.5.1
deeptools
>=3.5.0
homer
>=4.11
macs2
>=2.2.7.1
matplotlib-base
>=3.1.3
numpy
>=1.18.1
pandas
>=1.0.1
picard
>=2.24.2
python
>=3.7
r-base
>=4.1,<4.2.0a0
r-gplots
>=3.1.1
samtools
>=1.7
scipy
>=1.4.1
seaborn
>=0.10.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install ssdrippipeline
and update with:
conda update ssdrippipeline
or use the docker container:
docker pull quay.io/biocontainers/ssdrippipeline:<tag>
(see ssdrippipeline/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/ssdrippipeline/README.html)