recipe sshmm

ssHMM is an RNA motif finder that recovers sequence-structure motifs from RNA-binding protein data, such as CLIP-Seq data.

Homepage

https://github.molgen.mpg.de/heller/ssHMM

License

GPL-3.0

Recipe

/sshmm/meta.yaml

package sshmm

(downloads) docker_sshmm

Versions

1.0.7-2, 1.0.7-1, 1.0.7-0

Depends bedtools

Depends forgi

Depends ghmm

Depends graphviz

Depends libgcc-ng

>=4.9

Depends libxml2

>=2.9.8,<2.10.0a0

Depends numpy

1.11.*

Depends pygraphviz

Depends python

>=2.7,<2.8.0a0

Depends rnashapes

2.1.6.*

Depends rnastructure

Depends weblogo

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sshmm

and update with:

conda update sshmm

or use the docker container:

docker pull quay.io/biocontainers/sshmm:<tag>

(see sshmm/tags for valid values for <tag>)