recipe sshmm

ssHMM is an RNA motif finder that recovers sequence-structure motifs from RNA-binding protein data, such as CLIP-Seq data.

Homepage:

https://github.molgen.mpg.de/heller/ssHMM

License:

GPL-3.0

Recipe:

/sshmm/meta.yaml

package sshmm

Versions:

1.0.7-4,  1.0.7-3,  1.0.7-2,  1.0.7-1,  1.0.7-0

Depends:

• bedtools

• forgi

• ghmm

• graphviz >=2.40.1,<3.0a0

• libgcc-ng >=9.3.0

• libxml2 >=2.9.10,<2.10.0a0

• numpy 1.11.*

• pygraphviz

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• rnashapes 2.1.6.*

• rnastructure

• weblogo

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install sshmm

and update with:

conda update sshmm

or use the docker container:

docker pull quay.io/biocontainers/sshmm:<tag>

(see sshmm/tags for valid values for <tag>)

Download stats

Link to this page

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